PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009596250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 335aa    MW: 38067.9 Da    PI: 5.9692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009596250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd +l+++++ +G+g+W+t ++  g+ R++k+c++rw +yl
   XP_009596250.1 14 KGPWTTEEDHKLIQYIQIHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding53.74.9e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
   XP_009596250.1  67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.42965IPR017930Myb domain
SuperFamilySSF466894.87E-3111108IPR009057Homeodomain-like
SMARTSM007173.3E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-161461IPR001005SANT/Myb domain
CDDcd001672.12E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2665116IPR009057Homeodomain-like
SMARTSM007174.8E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129420.34266116IPR017930Myb domain
PfamPF002492.0E-1567111IPR001005SANT/Myb domain
CDDcd001674.52E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRSPCCDKN GLKKGPWTTE EDHKLIQYIQ IHGPGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRSG  120
IDPVTHSPRL DLLDLSSLLN STQFNLSSLL GLQALINPEI FRIATTLLAS QNESPELLLQ  180
KLQENQLLNT QLQNLEGSEL LLQKLQENQL LNAPMQNQLQ NFQPNNQFQN QIPEIPTFST  240
PSNVPCSSSQ PMQLGHVESY LMNDQMLPPQ NYGYCASDTS DNSTFQSLNN SSNQNISLDS  300
VLSTPLSSTE DEKESYCSNL MKFEIPASLN FDDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-30121162105C-Myb DNA-Binding Domain
1msf_C1e-30121162105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596250.10.0PREDICTED: myb-related protein 315
RefseqXP_016456555.10.0PREDICTED: transcription factor MYB39-like
TrEMBLM1BKB21e-179M1BKB2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000472191e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-90myb domain protein 41